13 selections by the New York Islanders in the 2006 NHL Entry Draft.
| Year | Pick | Round | Team | Player | Pos | Amateur Club | League | Country |
|---|---|---|---|---|---|---|---|---|
| 2006 | 7 | 1 | New York Islanders | Kyle Okposo | RW | Des Moines | USHL | USA |
| 2006 | 60 | 2 | New York Islanders | Jesse Joensuu | F | Assat | FINLAND | FIN |
| 2006 | 70 | 3 | New York Islanders | Robin Figren | F | Frolunda Jr. | SJL | SWE |
| 2006 | 100 | 4 | New York Islanders | Rhett Rakhshani | RW | USA U-18 | USA | USA |
| 2006 | 108 | 4 | New York Islanders | Jase Weslosky | G | Sherwood Park | AJHL | CAN |
| 2006 | 115 | 4 | New York Islanders | Tomas Marcinko | C | Kosice | SVK | SVK |
| 2006 | 119 | 4 | New York Islanders | Doug Rogers | C | St. Sebastian's School | USHSE | USA |
| 2006 | 126 | 5 | New York Islanders | Shane Sims | D | Des Moines | USHL | USA |
| 2006 | 141 | 5 | New York Islanders | Kim Johansson | F | Malmo Jr. | SJL | SWE |
| 2006 | 160 | 6 | New York Islanders | Andrew MacDonald | D | Moncton | QMJHL | CAN |
| 2006 | 171 | 6 | New York Islanders | Brian Day | RW | Governor's Academy | USHSE | USA |
| 2006 | 173 | 6 | New York Islanders | Stefan Ridderwall | G | Djurgarden Jr. | SJL | SWE |
| 2006 | 190 | 7 | New York Islanders | Troy Mattila | LW | Springfield | NAHL | USA |